Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs17642450 | chr15:91754000 | G/A | 1.57E-5 | 368 | 20.45 | 14.33 | 9.87 | KM Plot |
| LIHC | rs17663749 | chr11:107185075 | G/A | 9.53E-6 | 367 | 19.7 | 20.58 | 1.87 | KM Plot |
| LIHC | rs17774627 | chr8:10635846 | A/G | 1.88E-5 | 368 | 19.7 | 14.17 | 23.02 | KM Plot |
| LIHC | rs17825275 | chr3:7958489 | C/T | 8.59E-6 | 368 | 19.5 | 21.57 | 4.3 | KM Plot |
| LIHC | rs183256883 | chr7:1175487 | G/T | 1.62E-7 | 360 | 18.73 | 25.77 | 1.53 | KM Plot |
| LIHC | rs1858761 | chr7:90317754 | A/G | 4.9E-5 | 363 | 14.5 | 20.03 | 20.9 | KM Plot |
| LIHC | rs1858762 | chr7:90317704 | A/T | 4.9E-5 | 363 | 14.5 | 20.03 | 20.9 | KM Plot |
| LIHC | rs1858763 | chr7:90317673 | C/T | 4.9E-5 | 363 | 14.5 | 20.03 | 20.9 | KM Plot |
| LIHC | rs1928973 | chr5:26054596 | G/T | 1.68E-5 | 364 | 19.5 | 20.65 | 1.03 | KM Plot |
| LIHC | rs200069658 | chr2:37144196 | A/T | 1.75E-6 | 363 | 20.45 | 10.97 | 8.73 | KM Plot |
| LIHC | rs200075822 | chr2:200998384 | ATTT/A | 5.27E-7 | 367 | 20.03 | 21.1 | 5.42 | KM Plot |
| LIHC | rs200192080 | chr13:108883981 | GC/G | 6.84E-7 | 363 | 20.95 | 17.63 | 7.13 | KM Plot |
| LIHC | rs2195086 | chr2:60814466 | A/C | 6.91E-5 | 368 | 19.33 | 22.43 | 5.1 | KM Plot |
| LIHC | rs2230151 | chr5:126171974 | C/T | 3.42E-5 | 364 | 19.83 | 12.17 | 2.23 | KM Plot |
| LIHC | rs2232605 | chr20:36993179 | G/C | 9.99E-16 | 368 | 19.87 | 18.77 | 0.53 | KM Plot |